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  Indian J Med Microbiol
 

Figure 1: Phylogenetic analysis of CHIK 2016 isolate based on full genome sequence: tree depicting the genotypic status of Indian CHIK virus isolates, based on full-length genome sequences of 18 isolates. Numbers at nodes indicate bootstrap support (%). Isolates included are CHIK2016 (Pune isolate), Karnataka06 (EF027135), Andhra Pradesh06 (INDAP06), Maharashtra06 (EF027136), Tamilnadu06 (EF027138), Rajasthan06 (EF027137), INDKR51 (FJ000066), INDGJ53CSF (FJ000065), INDMH51 (FJ000067), INDKA51 (FJ000068), Reunion (DQ443544.2), Reunion1 (KT449801.1), Maharashtra (EF027139), Kolkatta63 (EF027140), Barsi73 (EF027141), S27 (AF369024), S27-2 (AF490259), Vaccine TSIGSD218 (EF452494), Malaysia2015 (KM923919), Malaysia2015 (KM923920). *All strains were obtained from humans except for Maharashtra00 (EF027139.1) which was obtained from a mosquito.

Figure 1: Phylogenetic analysis of CHIK 2016 isolate based on full genome sequence: tree depicting the genotypic status of Indian CHIK virus isolates, based on full-length genome sequences of 18 isolates. Numbers at nodes indicate bootstrap support (%). Isolates included are CHIK2016 (Pune isolate), Karnataka06 (EF027135), Andhra Pradesh06 (INDAP06), Maharashtra06 (EF027136), Tamilnadu06 (EF027138), Rajasthan06 (EF027137), INDKR51 (FJ000066), INDGJ53CSF (FJ000065), INDMH51 (FJ000067), INDKA51 (FJ000068), Reunion (DQ443544.2), Reunion1 (KT449801.1), Maharashtra (EF027139), Kolkatta63 (EF027140), Barsi73 (EF027141), S27 (AF369024), S27-2 (AF490259), Vaccine TSIGSD218 (EF452494), Malaysia2015 (KM923919), Malaysia2015 (KM923920). <sup>*</sup>All strains were obtained from humans except for Maharashtra00 (EF027139.1) which was obtained from a mosquito.